The launch puts 3 "G's" of force on the Shuttle and all of its contents; under this force, AMS's whole structure will bend downwards by a few centimeters. In addition, there are 150 decibels of noise, a really unbelieveable shaking that can easily twist off an unsecured bolt or two. (It's OK, AMS will have no unsecured bolts!) Meanwhile, we are rushing upwards at, eventually, ten kilometers per second.
After only one minute, AMS will be above most of the atmosphere - an important detail, since all of the air inside of AMS has to be able to escape quickly. (So, as much as we'd like to, we cannot wrap AMS in airtight, light-tight plastic - we have to leave big paths for the air to escape). After three minutes, the engines begin cutting out, the vibration ceases, and we're basically in orbit. From there on, the Shuttle gives AMS a smooth ride to the International Space Station.